PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_28872-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 1042aa    MW: 111184 Da    PI: 10.5856
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_28872-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.66e-08280324244
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 
                      ++WT++Ed  l  +v++ G g+W  I r+ +   +Rt  q+  rw
  TRIUR3_28872-P1 280 KAWTKDEDAELMAGVHKCGEGNWLDILRKYNfdSTRTYGQLSQRW 324
                      68*******************************99**99999999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-10273331IPR009057Homeodomain-like
PROSITE profilePS5129415.492274332IPR017930Myb domain
SuperFamilySSF466893.73E-11277330IPR009057Homeodomain-like
SMARTSM007171.2E-6278330IPR001005SANT/Myb domain
PfamPF002491.4E-6280324IPR001005SANT/Myb domain
CDDcd116603.89E-12285329No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1042 aa     Download sequence    Send to blast
MVAAAAGAKR KRDLSEDEVY LILHKSVLLL DLRATRRFSP ARPRVLVRRS ILLQEVAQHT  60
ERRSINWRAL VAKTATGITS AREYQMLWRY IAYGHDFVEN VEDGSPQPLG DESDLECEIE  120
PSPKPSNEAA AEASRFAKVS LHGSGATQLV ADRHSWCFDH NQTARMLPGV LLQRELNVVI  180
LHQMTKTTLF CIRWKTLRIL MYGPSREQGS SHRANSDVPL LNTPNEKIPR VSSDKQLAQS  240
HRLTNGTGPV SNSKQAPHTG LSPDSFDGNG PHNKKTKKTK AWTKDEDAEL MAGVHKCGEG  300
NWLDILRKYN FDSTRTYGQL SQRWAVISRR QATTKPAKAK PVTGGYDMKA TQKAFFMALD  360
MPMGKPGGLS TLRSGASQQS TQHPAPVFGA AAPELKSATP SSSFSLPVPV PSAAPGPVSA  420
QVQVQPPRAQ QVPSQAAPSK VSNASIKSRN SSKKQTAQAN PTNAPSSIQA AAIAAGGRIA  480
TASIATNLLK AAQSPQAVHI RSRGKGSSKT STSSKASTMA GEPGTQTGGA QHPELPNCSA  540
PTQSPTVLIT QSTEQVNVVP EVAGVNPPEQ SASAHLLEPD RTLSTTPVPG PCDNMEIDDD  600
STFCVVTMED LFPEDVKQPE TVKQPEMVRQ PETVRQPEMV RQTETVSQPE MVRQTETVRQ  660
PEMVKQPETV RQPEMVDPKA EEMIDPKDAD MLEFDRFVAQ GCLTTDYSDK SKGVKIAPGA  720
QGATASQKKK QLPTVGKSIP VFRAPVTMKK TKALPSHGAT LASTVASSGL VGTGNAGVLS  780
KAIYRKPAGP GTTGKQNSGT PARNTAPGTG TPPVRNTAPG TGTPPVRNTA PGTGTPPVRN  840
TAPGTGTPPV RNMAPGTGTP AVRNTAPGTG TAARNSLTGT GTPQARNLLT GTGTPPARNA  900
APVTGATPAR NLLTGMGTPP AIRQHNPAPG RDHQVRCRAT CSESVDSLSP LRVPFNLVWS  960
WLACLWTVAA GMGSAVGRVA PLEDMDGGLR LPPALRTGYY KPRPVTTERF RTIQASKITT  1020
PARKTTPTFH ISHTPKAIIQ RR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3708180.0AK370818.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2117I01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003572605.10.0PREDICTED: uncharacterized protein LOC100823787
TrEMBLM7ZCA40.0M7ZCA4_TRIUA; Telomeric repeat-binding factor 1
STRINGMLOC_66753.10.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46843754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.12e-20MYB_related family protein